Tools for the analysis of Random Forests (and cforest)

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Documentation for package ‘rFtools’ version 0.5-6

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rFtools-package Tools for the (meta-) analysis of Random Forests
barplot.LevelsVsLayerByMAF barplot of category frequencies separated by MAF
getAncestryForest retrieves the path from node to root for all (not terminal) nodes
getAncestryNode retrieves path from node to root
getAncestryTree retrieves the path from node to root for all nodes of a tree
getCategoryFrequenciesForest retrieves category frequency information of a forest
getCategoryFrequenciesNode retrieves the category frequencies for one node
getCategoryFrequenciesTree retrieves category frequencies for one tree
getLayerForest retrieves the layer of (not terminal) nodes
getLayerTree retrieves the layer for all nodes of a tree
getLevelsOfSplitVariablesForest returns the number of different categories
getMAFofSplitVariablesForest returns the minor allel frequency of the split variables
getMAFofSplitVariablesTree returns minor allele frequencies
getSplitInformationForest returns split information on forest
getSplitInformationTree get split information for all not terminal nodes in tree
getSplitVariablesForest retrieves split variables from forest
getSplitVariablesTree extract split variables from tree
plot.LevelsVsLayer visualization of levels per layer
plot.LevelsVsLayerByMAF plot levels per layer and minor allel frequency
plot.LevelsVsLayerCFbyMAF plot levels per layer and MAF for conditional forests
plot.SplitVarsByLayerAndMAF visualize category frequencies of split variable
rFtools Tools for the (meta-) analysis of Random Forests
simulateAndSafe wraper to create all objects needed for the further (meta-) analysis of random forests.
simulateAndTable simulate and table information in one step
simulateSNPdata simulate SNP data
tableLevelsVsLayer tables levels vs. layer
tableLevelsVsLayerByMAF table category frequency information by MAF
tableLevelsVsLayerCFbyMAF table cforest category frequency information by MAF
tableSplitVarLevelsVsLayer table category frequency information for split variables
tableSplitVarLevelsVsLayerByMAF table category frequencies per layer and MAF
tableSplitVarsByLayerAndMAF table category frequency information stratified by layer and MAF